SNP Profiles of SPA 9 [COL] View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
1._SPA_9_[COL]	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
2._GC-01-099-5-16	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
3._GC-01-099-5-16	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
4._GC-01-099-5-16	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
5._GC-01-099-5-16	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
6._GC-01-099-5-16	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
7._GC-01-099-5-16	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
8._GC-01-099-5-16	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
9._GC-01-099-5-16	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
10._SPA_9_[COL]	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
11._SPA_9_[COL]	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
12._SPA_9_[COL]	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
13._SPA_9_[COL]	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
14._SPA_9_[COL]	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
15._SPA_9_[COL]	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
16._RUQ_235	CG	AT	AC	GT	AC	CC	AG	CT	AA	GG	AG	AC	CT	GT
17._RUQ_235	_	_	CC	-	-	CC	-	CT	-	_	AG	AC	-	GT
18._SPA_9_[COL]	GG	TT	AC	GG	AC	CG	AA	CT	AA	GG	AA	CC	TT	GG
19._RUQ_235	CG	AT	_	AC	AC	GG	AG	AG	AA	GG	_	AC	_	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
1._SPA_9_[COL]	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
2._GC-01-099-5-16	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
3._GC-01-099-5-16	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
4._GC-01-099-5-16	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
5._GC-01-099-5-16	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
6._GC-01-099-5-16	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
7._GC-01-099-5-16	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
8._GC-01-099-5-16	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
9._GC-01-099-5-16	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
10._SPA_9_[COL]	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
11._SPA_9_[COL]	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
12._SPA_9_[COL]	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
13._SPA_9_[COL]	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
14._SPA_9_[COL]	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
15._SPA_9_[COL]	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
16._RUQ_235	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT	AG
17._RUQ_235	CG	-	TT	_	GG	CG	-	_	_	_	_	AA	-	_
18._SPA_9_[COL]	GG	AA	CC	AA	GG	CG	CC	CC	GG	AA	TT	AG	CC	GG
19._RUQ_235	CG	CC	AA	_	CC	CG	AG	AG	CG	AT	AG	AA	AG	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
1._SPA_9_[COL]	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
2._GC-01-099-5-16	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
3._GC-01-099-5-16	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
4._GC-01-099-5-16	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
5._GC-01-099-5-16	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
6._GC-01-099-5-16	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
7._GC-01-099-5-16	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
8._GC-01-099-5-16	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
9._GC-01-099-5-16	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
10._SPA_9_[COL]	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
11._SPA_9_[COL]	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
12._SPA_9_[COL]	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
13._SPA_9_[COL]	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
14._SPA_9_[COL]	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
15._SPA_9_[COL]	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X	X_X
16._RUQ_235	AA	CT	CT	GT	CT	AC	CT	TT	CC	AG	CT	X_X	X_X	X_X
17._RUQ_235	_	_	_	GT	_	_	_	TT	CC	AA	_	X_X	X_X	X_X
18._SPA_9_[COL]	AA	CC	CC	GT	TT	AC	TT	TT	CG	AA	CC	X_X	X_X	X_X
19._RUQ_235	AA	_	_	AC	AG	AC	AG	AA	GG	AA	AG	X_X	X_X	X_X

Input profile: SPA_9_[COL]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1516 4

Dapeng Zhang, 2016

1._SPA_9_[COL]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1516 6 > FP

Dapeng Zhang, 2016

2._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

3._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

4._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

5._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

6._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._SPA_9_[COL]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1516 9 > FP

Dapeng Zhang, 2016

11._SPA_9_[COL]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1516 14 > F

Dapeng Zhang, 2016

12._SPA_9_[COL]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1516 1 > FP

Dapeng Zhang, 2016

13._SPA_9_[COL]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1516 5

Dapeng Zhang, 2016

14._SPA_9_[COL]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1516 3

Dapeng Zhang, 2016

15._SPA_9_[COL]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1516 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._SPA_9_[COL] RUQ_235

98.7 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._SPA_9_[COL] RUQ_235

96.7 %
15 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._SPA_9_[COL]

64.1 %
39 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

19._SPA_9_[COL] RUQ_235

51.5 %
33 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP193
6	TcSNP226	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP917	23	TcSNP929	24	TcSNP953	25	TcSNP994
26	TcSNP998	27	TcSNP1060	28	TcSNP1062	29	TcSNP1075	30	TcSNP1144
31	TcSNP1165	32	TcSNP1253	33	TcSNP1270	34	TcSNP1350	35	TcSNP1414
36	TcSNP1442	37	TcSNP1458	38	TcSNP1484	39	TcSNP1520